External - Personnes Structure | UMR DECOD : Dynamique et durabilité des écosystèmes

Saubin Méline, Tellier Aurélien, Stoeckel Solenn, Andrieux Axelle, Halkett Fabien (2024). Approximate Bayesian Computation applied to time series of population genetic data disentangles rapid genetic changes and demographic variations in a pathogen population. Molecular Ecology, 2024, 33 (10), ⟨10.1111/mec.16965⟩

Stoeckel Solenn, Becheler Ronan, Bocharova Ekaterina, Barloy Dominique (2024). GenAPoPop 1.0 : A user‐friendly software to analyse genetic diversity and structure from partially clonal and selfed autopolyploid organisms. Molecular Ecology Resources, 2024, 24 (1), ⟨10.1111/1755-0998.13886⟩

Saubin Méline, Stoeckel Solenn, Tellier Aurélien, Halkett Fabien (2024). Neutral genetic structuring of pathogen populations during rapid adaptation. Journal of Heredity, In press, ⟨10.1093/jhered/esae036⟩

Stoeckel Solenn, Becheler Ronan, Portillo-Lemus Luis, Harang Marilyne, Besnard Anne-Laure, Lassalle Gilles, Causse Romain, Michon-Coudouel Sophie, Park Daniel, Pope Bernard, Petit Eric, Barloy Dominique (2024). Reproductive modes in populations of late-acting self-incompatible and self-compatible polyploid Ludwigia grandiflora subsp. hexapetala in western Europe. Peer Community Journal, 2024, 4, pp.e82. ⟨10.24072/pci.evolbiol.100788⟩

Stoeckel Solenn, Becheler Ronan, Portillo Lemus Luis, Harang Marilyne, Besnard Anne-Laure, Lassalle Gilles, Causse Romain, Michon-Coudouel Sophie, Park Daniel, Pope Bernard, Petit Eric J., Barloy Dominique (2024). Supplementary Information for Reproductive modes in populations of late-acting self-incompatible and self-compatible polyploid Ludwigia grandiflora subsp. hexapetala in western Europe. 2024, ⟨10.5281/zenodo.13610355⟩

Halkett Fabien, Saubin Méline, Xhaard Constance, Becheler Ronan, Stoeckel Solenn, Fabre Frédéric, Coville Jérôme, Marçais Benoit, Frey Pascal (2023). The Durance River valley: a great ecological system to study dispersal. Journée thématique du LabEx ARBRE "Maladies forestières et changements globaux", Mireia Gomez-Gallego, Jun 2023, Champenoux, France, France

Saubin Méline, Louet Clémentine, Bousset Lydia, Fabre Frédéric, Frey Pascal, Fudal Isabelle, Grognard Frédéric, Hamelin Frédéric, Mailleret Ludovic, Stoeckel Solenn, Touzeau Suzanne, Petre Benjamin, Halkett Fabien (2023). Improving sustainable crop protection using population genetics concepts. Molecular Ecology, 2023, 32 (10), pp.2461-2471. ⟨10.1111/mec.16634⟩

Stoeckel Solenn, Barloy Dominique, Portillo Lemus Luis, Becheler Ronan (2023). Genotyping measures and population genetic indices for assesing reproductive modes of polyploid Ludwigia grandiflora subsp. hexapetala in western Europe. 2023, ⟨10.5281/zenodo.12760022⟩

Williams T, Krueger‐hadfield Stacy, Hill-Spanik Kristina M., Kosaki Randall K., Stoeckel Solenn, Spalding Heather L. (2023). The reproductive system of the cryptogenic alga Chondria tumulosa (Florideophyceae) at Manawai, Papahānaumokuākea Marine National Monument. Phycologia, 2023, Phycologia, ⟨10.1080/00318884.2023.2284074⟩

Heiser Sabrina, Amsler Charles D., Stoeckel Solenn, Mcclintock James B., Baker Bill J., Krueger-Hadfield Stacy (2023). Tetrasporophytic bias coupled with heterozygote deficiency in Antarctic Plocamium sp. (Florideophyceae, Rhodophyta). Journal of Phycology, 2023, 59 (4), pp.681-697. ⟨10.1111/jpy.13339⟩

Saubin Méline, Becheler Ronan, Coville Jérôme, Develay Lucie, Fabre Bénédicte, Fabre Frédéric, Frey Pascal, Stoeckel Solenn, Halkett Fabien (2022). Genetic signatures of a range expansion in natura: how clones play leapfrog?. Congress of the European Society for Evolutionary Biology, Lukáš Kratochvíl, Aug 2022, Prague, Czech Republic

Portillo Lemus Luis Octavio, Harang Maryline, Bozec Michel, Haury Jacques, Stoeckel Solenn, Barloy Dominique (2022). Late-acting self-incompatible system, preferential allogamy and delayed selfing in the heteromorphic invasive populations of Ludwigia grandiflora subsp. hexapetala. Peer Community Journal, 2022, 2, pp.e23. ⟨10.24072/pcjournal.108⟩

Saubin Méline, Stoeckel Solenn, Tellier Aurélien, Halkett Fabien (2022). Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistance. Petit Pois Déridé 2022; 40ème réunion du Groupe d'Étude de Biologie et Génétique des Populations, May 2022, Lille, France

Saubin Méline, Louet Clémentine, Stoeckel Solenn, Halkett Fabien, Tellier Aurélien (2022). Demographic and genomic consequences of a rapid adaptation event in the poplar rust pathogen. Congress of the European Society for Evolutionary Biology, Lukáš Kratochvíl, Aug 2022, Prague, Czech Republic

Saubin Méline, Stoeckel Solenn, Tellier Aurélien, Halkett Fabien (2022). Temporal genetic signatures of rapid demographic changes caused by directional selection, the case of a pathogen population overcoming plant resistance. Séminaire MEE (Modélisation en écologie et évolution), May 2022, Montpellier, France

Saubin Méline, Stoeckel Solenn, Tellier Aurélien, Halkett Fabien (2022). Demographic and genetic consequences of a rapid adaptation event in the poplar rust pathogen. 2ème Réunion du Réseau E3GP3, Nov 2022, Paris, France

Pierre Jean-Sébastien, Stoeckel Solenn, Wajnberg Eric (2022). The advantage of sex: Reinserting fluctuating selection in the pluralist approach. PLoS ONE, 2022, 17 (8), pp.1-15. ⟨10.1371/journal.pone.0272134⟩

Besnard Anne-Laure, Lassalle Gilles, Michon-Coudouel Sophie, Stoeckel Solenn, Petit Eric J. (2022). Génotypage SNP : Protocole Hi-Plex2. Genomics, May 2022, Orléans, France

Ferreira de Carvalho Julie, Stoeckel Solenn, Eber Frédérique, Lodé-Taburel Maryse, Gilet Marie-Madeleine, Trotoux Gwenn, Morice Jérôme, Falentin Cyril, Chèvre Anne-Marie, Rousseau-Gueutin Mathieu (2021). Untangling structural factors driving genome stabilization in nascent Brassica napus allopolyploids. New Phytologist, 2021, 230 (5), pp.2072-2084. ⟨10.1111/nph.17308⟩

Portillo Lemus Luis, Bozec Michel, Harang Marilyne, Coudreuse Julie, Haury Jacques, Stoeckel Solenn, Barloy Dominique (2021). Self‐incompatibility limits sexual reproduction rather than environmental conditions in an invasive water primrose. Plant-Environment Interactions, 2021, 2 (2), pp.74-86. ⟨10.1002/pei3.10042⟩

Stoeckel Solenn, Bocharova Ekaterina, Barloy Dominique (2021). GenAPoPop1.0: Computing population genetic indices and inferring reproductive modes from genotype diversity in polyploid populations. Polyploidy and Biodiversity, The International Research Network (IRN) Polyploidy and Biodiversity; The French « Plant Genome Dynamics » network (DYNAGEV), Oct 2021, Rennes (Campus de Beaulieu), France

Krueger-Hadfield Stacy A, Guillemin Marie-Laure, Destombe Christophe, Valero Myriam, Stoeckel Solenn (2021). Exploring the Genetic Consequences of Clonality in Haplodiplontic Taxa. Journal of Heredity, 2021, 112 (1), pp.92-107. ⟨10.1093/jhered/esaa063⟩

Stoeckel Solenn, Arnaud-Haond Sophie, Krueger-Hadfield Stacy (2021). The Combined Effect of Haplodiplonty and Partial Clonality on Genotypic and Genetic Diversity in a Finite Mutating Population. Journal of Heredity, 2021, 112 (1), pp.78-91. ⟨10.1093/jhered/esaa062⟩

Stoeckel Solenn, Porro Barbara, Arnaud‐haond Sophie (2021). The discernible and hidden effects of clonality on the genotypic and genetic states of populations: Improving our estimation of clonal rates. Molecular Ecology Resources, 2021, 21 (4), pp.1068-1084. ⟨10.1111/1755-0998.13316⟩

Stoeckel Solenn (2021). Stochastic models help understanding the evolution of partially clonal species and inferring rate of clonality from genetic diversity. Third Chile-France Academic Forum, CNRS; Universidad de Chile; Pontificia Universidad Católica de Chile; Universidad de Concepción, Sep 2021, Santiago de Chile, Chile

Ferreira de Carvalho Julie, Stoeckel Solenn, Eber Frédérique, Lodé-Taburel Maryse, Gilet Marie- Madeleine, Trotoux Gwenn, Morice Jérôme, Falentin Cyril, Chèvre Anne-Marie, Rousseau-Gueutin Mathieu (2020). Genome Stabilization after Allopolyploidization in nascent Brassica napus. Plant and Animal Genome Conference, Jan 2020, San Diego (California), United States

Genitoni Julien, Vassaux Danièle, Delaunay Alain, Citerne Sylvie, Portillo Lemus Luis, Etienne Marie-Pierre, Renault David, Stoeckel Solenn, Barloy Dominique, Maury Stéphane (2020). Hypomethylation of the aquatic invasive plant, Ludwigia grandiflora subsp. hexapetala mimics the adaptive transition into the terrestrial morphotype. Physiologia Plantarum, 2020, 170 (2), pp.280-298. ⟨10.1111/ppl.13162⟩

Becheler Ronan, Guillemin Marie-Laure, Stoeckel Solenn, Mauger Stéphane, Saunier Alice, Brante Antonio, Destombe Christophe, Valero Myriam (2020). After a catastrophe, a little bit of sex is better than nothing: Genetic consequences of a major earthquake on asexual and sexual populations. Evolutionary Applications, 2020, 13 (8), pp.2086- 2100. ⟨10.1111/EVA.12967⟩

Arnaud‐haond Sophie, Stoeckel Solenn, Bailleul Diane (2020). New insights into the population genetics of partially clonal organisms: When seagrass data meet theoretical expectations. Molecular Ecology, 2020, 29 (17), pp.3248-3260. ⟨10.1111/mec.15532⟩

Stoeckel Solenn (2019). The dynamics of genetic diversity in partially clonal populations. The American Genetic Association President’s Symposium: Sex and Asex: the genetics of complex life cycles, Jun 2019, Portland, United States

Stoeckel Solenn (2019). Effets des modes de reproduction sur la diversité génétique et implications pour les stratégies de conservation.. 3. Journées scientifiques GDR 3606 REPRO : ReproSciences 2019, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2019, Toulouse, France

Rousseau-Gueutin Mathieu, Ferreira de Carvalho Julie, Stoeckel Solenn, Morice Jérôme, Gilet Marie-Madeleine, Eber Frederique, Lodé-Taburel Maryse, Trotoux Gwenn, Falentin Cyril, Deniot Gwenaëlle, Huteau Virginie, Coriton Olivier, Pelé Alexandre, Chèvre Anne-Marie (2018). Impact of structural variations on the meiotic stability and plant fertility of the allotetraploid B. napus (oilseed rape). Second Joint Congress on Evolutionary Biology, Aug 2018, Montpellier, France

Becheler Ronan, Masson Jean-Pierre, Arnaud-Haond Sophie, Halkett Fabien, Mariette Stéphanie, Guillemin Marie-Laure, Valero Myriam, Destombe Christophe, Stoeckel Solenn (2018). ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two time steps. Jacques Monod conference "Sex uncovered: the evolutionary biology of reproductive systems", Apr 2018, Roscoff, France

Becheler Ronan, Masson Jean-Pierre, Arnaud-Haond Sophie, Halkett Fabien, Mariette Stéphanie, Guillemin Marie-Laure, Valero Myriam, Destombe Christophe, Stoeckel Solenn (2017). ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. Molecular Ecology Resources, 2017, 17 (6), pp.e251-e267. ⟨10.1111/1755-0998.12698⟩

Montecinos Alejandro E., Guillemin Marie-Laure, Couceiro Lucia, Peters Akira F., Stoeckel Solenn, Valero Myriam (2017). Hybridization between two cryptic filamentous brown seaweeds along the shore: analysing pre- and postzygotic barriers in populations of individuals with varying ploidy levels. Molecular Ecology, 2017, 26 (13), pp.3497 - 3512. ⟨10.1111/mec.14098⟩

Becheler Ronan, Goyeau Henriette, Stoeckel Solenn, Halkett Fabien (2016). Exemple de « vieilles » lignées asexuées chez les rouilles. Réunion 2016 du groupe "champignons phytopathogènes", Nov 2016, Paris, France

Reichel Katja, Masson Jean-Pierre, Malrieu Florent, Arnaud-Haond Sophie, Stoeckel Solenn (2016). Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms.. BMC Genetics, 2016, 17 (1), pp.76. ⟨10.1186/s12863-016-0388-z⟩

Rouger Romuald, Reichel Katja, Malrieu Florent, Masson Jean-Pierre, Stoeckel Solenn (2016). Effects of complex life cycles on genetic diversity: cyclical parthenogenesis. Heredity, 2016, 117 (5), pp.336-347. ⟨10.1038/hdy.2016.52⟩

Bailleul Diane, Stoeckel Solenn, Arnaud-Haond Sophie (2016). RClone : Partially Clonal Populations Analysis. 2016

Bailleul Diane, Stoeckel Solenn, Arnaud-Haond Sophie (2016). RClone: a package to identify MultiLocus Clonal Lineages and handle clonal data sets in r .. Methods in Ecology and Evolution, 2016, 7 (8), pp.966 - 970. ⟨10.1111/2041-210X.12550⟩

Gilabert Aude, Dedryver Charles-Antoine, Stoeckel Solenn, Plantegenest Manuel, Simon Jean-Christophe (2015). Longitudinal clines in the frequency distribution of 'super-clones' in an aphid crop pest. Bulletin of Entomological Research, 2015, 105 (6), pp.694-703. ⟨10.1017/S0007485315000619⟩

Reichel Katja, Bahier Valentin, Midoux Cédric, Parisey Nicolas, Masson Jean-Pierre, Stoeckel Solenn (2015). Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics.. Algorithms for Molecular Biology, 2015, 10 (1), pp.31. ⟨10.1186/s13015-015-0061-5⟩

Stoeckel Solenn, Masson Jean-Pierre (2014). The Exact Distributions of F-IS under Partial Asexuality in Small Finite Populations with Mutation. PLoS ONE, 2014, 9 (1), pp.e85228. ⟨10.1371/journal.pone.0085228⟩

Jaquiéry Julie, Rispe Claude, Roze Denis, Legeai Fabrice, Le Trionnaire Gaël, Stoeckel Solenn, Mieuzet Lucie, da Silva Corinne, Poulain Julie, Prunier-Leterme Nathalie, Ségurens Béatrice, Tagu Denis, Simon Jean-Christophe (2013). Masculinization of the X Chromosome in the Pea Aphid. PLoS Genetics, 2013, 9 (8), pp.e1003690. ⟨10.1371/journal.pgen.1003690⟩

Lander Tonya Allen, Klein Etienne K., Stoeckel Solenn, Mariette Stéphanie, Musch Brigitte, Oddou-Muratorio Sylvie (2013). Interpreting realized pollen flow in terms of pollinator travel paths and land-use resistance in heterogeneous landscapes. Landscape Ecology, 2013, 28 (9), pp.1769-1783. ⟨10.1007/s10980-013-9920-y⟩

Dussert Y., Remigereau M. -S., Fontaine M. C., Snirc A., Lakis G., Stoeckel Solenn, Langin Thierry, Sarr A., Robert T. (2013). Polymorphism pattern at a miniature inverted-repeat transposable element locus downstream of the domestication gene Teosinte-branched1 in wild and domesticated pearl millet. Molecular Ecology, 2013, 22 (2), pp.327 - 340. ⟨10.1111/mec.12139⟩

Jaquiéry Julie, Stoeckel Solenn, Nouhaud P., Mieuzet L., Mahéo F., Legeai F., Bernard N., Bonvoisin A., Vitalis R., Simon Jean-Christophe (2012). Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex.. Molecular Ecology, 2012, 21 (21), pp.5251-64. ⟨10.1111/mec.12048⟩

Jaquiéry Julie, Stoeckel Solenn, Rispe Claude, Mieuzet Lucie, Legeai Fabrice, Simon Jean-Christophe (2012). Accelerated evolution of sex chromosomes in aphids, an X0 system.. Molecular Biology and Evolution, 2012, 29 (2), epub ahead of print. ⟨10.1093/molbev/msr252⟩

Stoeckel Solenn, Klein E., Oddou Muratorio S., Musch Brigitte, Mariette S. (2012). Microevolution of s-allele frequencies in wild cherry populations: respective impacts of negative frequency dependent selection and genetic drift. Evolution - International Journal of Organic Evolution, 2012, 66 (2), pp.486-504. ⟨10.1111/j.1558-5646.2011.01457.x⟩

Simon Jean-Christophe, Stoeckel Solenn, Tagu Denis (2010). Evolutionary and functional insights into reproductive strategies of aphids. Comptes Rendus Biologies, 2010, 333 (6-7), pp.488-496. ⟨10.1016/j.crvi.2010.03.003⟩

Stoeckel Solenn, Klein Etienne K., Oddou-Muratorio Sylvie, Mariette Stéphanie (2010). Pollen dispersal in a self-incompatible species, the wild cherry (Prunus avium L.). Forest ecosystem genomics and adaptation, Jun 2010, San Lorenzo de El Escorial, Spain

Villate Laure, Esmenjaud Daniel, van Helden Maarten, Stoeckel Solenn, Plantard Olivier (2010). Genetic signature of amphimixis allows for the detection and fine scale localization of sexual reproduction events in a mainly parthenogenetic nematode. Molecular Ecology, 2010, 19 (5), pp.856-873. ⟨10.1111/j.1365-294X.2009.04511.x⟩

Navascués Miguel, Stoeckel Solenn, Mariette Stéphanie (2010). Genetic diversity and fitness in small populations of partially asexual, self-incompatible plants.. Heredity, 2010, 104 (5), pp.482-92. ⟨10.1038/hdy.2009.159⟩

Navascués Miguel, Stoeckel Solenn, Mariette Stéphanie (2010). Etude d’un système de reproduction combinant auto-incompatibilité gamétophytique et asexualité. Ecologie 2010, Sep 2010, Montpellier, France. 251 p., 2010, Proceedings of Ecologie 2010, Colloque national d’écologie scientifique

Gilabert A., Simon Jean-Christophe, Mieuzet L., Halkett F., Stoeckel Solenn, Plantegenest Manuel, Dedryver C.A. (2009). Climate and agricultural context shape reproductive mode variation in an aphid crop pest.. Molecular Ecology, 2009, 18 (14), pp.3050-61. ⟨10.1111/j.1365-294X.2009.04250.x⟩

Peccoud J., Figueroa C.C., Silva A.X., Ramirez C.C., Mieuzet L., Bonhomme J., Stoeckel Solenn, Plantegenest Manuel, Simon Jean-Christophe (2008). Host range expansion of an introduced insect pest through multiple colonizations of specialized clones.. Molecular Ecology, 2008, 17 (21), pp.4608-18. ⟨10.1111/j.1365-294X.2008.03949.x⟩

Stoeckel Solenn, Castric Vincent, Mariette S., Vekemans Xavier (2008). Unequal allelic frequencies at the self-incompatibility locus within local populations of Prunus avium L.: an effect of population structure?. Journal of Evolutionary Biology, 2008, 21 (3), pp.889-899. ⟨10.1111/j.1420-9101.2008.01504.x⟩

Navascués Miguel, Stoeckel Solenn, Mariette Stéphanie (2007). Evolution of inbreeding depression in species combining self-incompatibility and partial asexual reproduction. 11. Congress of the European Society of Evolutionary Biology (ESEB), Aug 2007, Uppsala, Sweden. 2007

Brachet Stéphanie, Bastien Catherine, Bilger Isabelle, Buret Corinne, Dufour Jean, Grange Jérome, Guérin Vanina, Jorge Véronique, Le Guerroué Bénédicte, Lesage Descauses Marie-Claude, Lévêque Laurent, Mardare Irinel, Mariette Stéphanie, Musch Brigitte, Sanchez Léopoldo, Stoeckel Solenn, Villar Marc, Santi Frédérique (2006). Stratégies raisonnées d'échantillonnage pour capturer la diversité génétique et sa structuration dans les populations naturelles - Application aux mesures de gestion conservatoire.. 6. colloque national du BRG, Oct 2006, La Rochelle, France

Mariette Stéphanie, Balsemin Emilie, Stoeckel Solenn, Tavaud Muriel, Le Bouler Hervé, Santi Frédérique, Verger Michel (2006). Parental participation in progeny and effective population sizes in experimental seed orchards of wild cherry Prunus avium L. (Batsch). Annals of Forest Science, 2006, 64 (5), pp.533-539. ⟨10.1051/forest:2007030⟩

Stoeckel Solenn, Grange Jean-Louis, Fernandez Manjarres J.F., Bilger Isabelle, Frascaria-Lacoste Nathalie, Mariette S. (2006). Heterozygote excess in a self-incompatible and partially clonal forest tree species Prunus avium L.. Molecular Ecology, 2006, 15 (8), pp.2109-2118. ⟨10.1111/j.1365-294X.2006.02926.x⟩

Stoeckel Solenn (2006). Impact de la propagation asexuée et du système d'auto-incompatibilité gamétophytique sur la structuration et l'évolution de la diversité génétique d'une essence forestière entomophile et disséminée, Prunus avium L.. Life Sciences [q-bio]. ENGREF (AgroParisTech), 2006. English. ⟨NNT : 06ENGR0008⟩

Santi Frédérique, Dufour Jean, Verger M., Riotte M., Guérin V., Buret Corinne, Mariette S., Balsemin Emilie, Bilger Isabelle, Grange Jean-Louis, Stoeckel Solenn, Le Bouler Hervé (2005). Modèle de gestions différenciées de vergers à graines : le merisier. Qualification des variétés améliorées et des peuplements sélectionnés. Variabilité du régime de reproduction et stabilité génétique des variétés forestières. Rapport final, 2005, pp.22-34